Remove Fan from Water Pump

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The picture should help withhow to properly remove the clutch fan. It shows a fan removal tool in use. This is available from most parts stores. Many offer a free rental on them. The large spanner wrench grips the pulley bolts to keep the pulley from spinning. The smaller wrench goes over the hex shaft on the fan. Once it is loose, it should spin off by hand.
 
The 4.0 is pictured. It shows a "lefty loosey" format for loosening the shaft. The 3.0 has opposite threads so it will be the reverse of this picture.
 
The 3.0 water pump bolts are recessed into the water pump and the removal tool will not seat on them. You must remove the 4 10 mm bolts from the pulley, slide the pulley forward, then reinstall the bolts. Loosen the 4 bolts with the belt still attached. This should give you enough tension to prevent the pulley from spinning.
 
To remove the fan from the engine/engine bay, It is usually necessary to remove the fan shroud and lift both pieces out together. On the 4.0 ther are only two bolts attaching the shroud.

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This shows another trick for loosening the bolts on a 4.0 water pump. These are not recessed like the 3.0 so strategically placing a screwdriver will give the leverage to get them all loose. When installing a 3-piece pulley kit, you are better off to loosen these bolts while the belt is still attached. Just loosen them, do not remove them, because the belt tension is beneficial for removing a 3.0 crank pulley also.